species:   Rhsol
pid:       PID0583
parent:    Rhi-milR-103
paralog:   
locus:     KB317748.1:84977-85047
matures:   ['UAGAACCAGAUUGAUGAUGCGCC', 'CAGCUGGCUCAAUUUGGUUGUAUG']
srr:       SRR1994875
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram KB317748.1:84977-85047

0 out of bounds
4 alignments
3 proper strand
3 stranded perfect matches

       *************************      **************************       
CAUUUUCAAUUAGAACCAGAUUGAUGAUGCGCCUUCUGGCAGCUGGCUCAAUUUGGUUGUAUGCAAUCUGC
..........((.(((((((((((....(((((....))).))....))))))))))).))..........
----------UAGAACCAGAUUGAUGAUGCGCC-------------------------------------- l=23 a=0 c
---------------------------------------CAGCUGGCUCAAUUUGGUUGUAUG-------- l=24 a=0 c*
----------------------------------UCUGGCAGCUGGCUCAAUUUGG--------------- l=22 a=1 ma
---------------------------------------CAGCUGGCUCAAUUUGGUUGUAUG-------- l=24 a=0 ma*

------------------------------------UGGCAGCUGGCUCAAUUUG---------------- l=19 a=1 
----------------------------------UCUGGCAGCUGGCUCAAUUUGG--------------- l=22 a=1 (ma)
---------UUAGAACCAGAUUGAUGAUGCGC--------------------------------------- l=23 a=1 

mb-00011
ax-1001011
ku-01
ss-100110101100
fn-001
